| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Adams Elementary School | 4672 35th Street | 216 | K-5 |
| Adobe Bluffs Elementary School | 8707 Adobe Bluffs Drive | 329 | K-5 |
| Alba School | 5510 Trojan Avenue | 45 | 1-12 |
| Albert Einstein Academy Middle School | 3035 Ash Street | 232 | 6-8 |
| Alcott Elementary School | 4680 Hidalgo Avenue | 177 | K-5 |
| Angier Elementary School | 8450 Hurlbut Street | 226 | K-5 |
| Arroyo Paseo Charter High School | 4001 University Avenue | 102 | 9-12 |
| Ashley Falls Elementary School | 13030 Ashley Falls Drive | 385 | K-6 |
| Audeo Charter School | 10170 Huennekens Street | 154 | 6-12 |
| Audubon Elementary School | 8111 San Vicente | 343 | K-8 |
| Baker Elementary School | 4041 T Street | 303 | K-5 |
| Balboa Elementary School | 1844 South 40th Street | 370 | K-6 |
| Barnard Elementary School | 2930 Barnard Street | 98 | K-4 |
| Bay Park Elementary School | 2433 Denver Street | 302 | K-5 |
| Bayview Terrace Elementary School | 2445 Fogg Street | 145 | K-5 |
| Bell Middle School | 620 Briarwood Road | 1,136 | 6-8 |
| Benchley/Weinberger Elementary School | 6269 Twin Lake Drive | 344 | K-5 |
| Bernardo Heights Middle School | 12990 Paseo Lucido | 1,338 | 6-8 |
| Bethune Elementary School | 6835 Benjamin Holt Road | 446 | K-8 |
| Birney Elementary School | 4345 Campus Avenue | 203 | K-5 |
| Black Mountain Middle School | 9353 Oviedo Street | 1,241 | 6-8 |
| Boone Elementary School | 7330 Brookhaven Road | 344 | K-5 |
| Burbank Elementary School | 2146 Julian Avenue | 204 | K-5 |
| Cabrillo Elementary School | 3120 Talbot Street | 118 | K-4 |
| Cadman Elementary School | 4370 Kamloop Avenue | 107 | K-5 |
| Canyon Crest Academy School | 5951 Village Center Loop Road | 1,284 | 9-12 |
| Canyon View Elementary School | 9225 Adolphia Street | 316 | K-5 |
| Carmel Creek Elementary School | 4210 Carmel Center Road | 298 | K-4 |
| Carmel Del Mar Elementary School | 12345 Carmel Park Drive | 305 | K-6 |
| Carmel Valley Middle School | 3800 Mykonos Lane | 1,330 | 7-8 |
| Carson Elementary School | 6905 Kramer Street | 298 | K-5 |
| Carver Elementary School | 3251 Juanita Street | 179 | K-8 |
| Central Elementary School | 4063 Polk Avenue | 475 | K-5 |
| Challenger Middle School | 10810 Parkdale Avenue | 1,079 | 6-8 |
| Charter Of San Diego School | 10170 Huennekens Street | 726 | 7-12 |
| Chavez Elementary School | 1404 South 40th Street | 360 | K-6 |
| Cherokee Point Elementary School | 3735 38th Street | 270 | K-5 |
| Chesterton Elementary School | 7335 Wheatley Street | 310 | K-5 |
| Chollas/Mead Elementary School | 401 North 45th Street | 496 | K-6 |
| Clairemont High School | 4150 Ute Drive | 1,033 | 9-12 |
| Clark Middle School | 4388 Thorn Street | 1,121 | 6-8 |
| Clay Elementary School | 6506 Solita Avenue | 151 | K-5 |
| Correia Middle School | 4302 Valeta Street | 777 | 7-8 |
| Crawford Champs School | 4191 Colts Way | 245 | 9-12 |
| Crawford Idea School | 4191 Colts Way | 250 | 9-12 |
| Crawford Law And Business School | 4191 Colts Way | 187 | 9-12 |
| Crawford Multimedia And Visual Arts School | 4191 Colts Way | 256 | 9-12 |
| Creative, Performing, And Media Arts School | 5050 Conrad Avenue | 886 | 6-8 |
| Creekside Elementary School | 12362 Springhurst Drive | 510 | K-5 |
| Crown Point Elementary School | 4033 Ingraham Street | 95 | K-5 |
| Cubberley Elementary School | 3201 Marathon Drive | 166 | K-5 |
| Curie Elementary School | 4080 Governor Drive | 389 | K-5 |
| Dailard Elementary School | 6425 Cibola Road | 334 | K-5 |
| Dana School | 1775 Chatsworth Boulevard | 772 | 5-6 |
| Darnall E-Charter School | 6020 Hughes Street | 338 | K-6 |
| De Portola Middle School | 11010 Clairemont Mesa Boulevard | 959 | 6-8 |
| Deer Canyon Elementary School | 13455 Russet Leaf Lane | 380 | K-5 |
| Del Norte High School | 16601 Nighthawk Lane | 266 | 9-12 |
| Del Sur Elementary School | 15665 Paseo Del Sur | 93 | K-5 |
| Dewey Elementary School | 3251 Rosecrans Street | 182 | K-4 |
| Diego Hills Charter School | 4585 College Avenue | 35 | K-12 |
| Dingeman Elementary School | 11840 Scripps Creek Drive | 495 | K-5 |
| Doyle Elementary School | 3950 Berino Court | 415 | K-5 |
| East Region Court School | 8374 Hercules Street | 6 | K-12 |
| Ecademy California School | 2534 State Street, Suite 310 | 21 | K-8 |
| Edison Elementary School | 4077 35th Street | 336 | K-5 |
| Einstein Academy School | 3035 Ash Street | 277 | K-5 |
| Emerson/Bandini Elementary School | 3510 Newton Avenue | 420 | K-6 |
| Emory Elementary School | 1915 Coronado Avenue | 455 | K-6 |
| Encanto Elementary School | 822 65th Street | 374 | K-5 |
| Ericson Elementary School | 11174 Westonhill Drive | 455 | K-5 |
| Euclid Elementary School | 4166 Euclid Avenue | 383 | K-5 |
| Evangeline Roberts Institute Of Learning School | 946 Hanover Street | - | K-6 |
| Explorer Elementary School | 2230 Truxtun Road | 215 | K-5 |
| Farb Middle School | 4880 La Cuenta Drive | 655 | 6-8 |
| Fay Elementary School | 4080 52nd Street | 368 | K-5 |
| Field Elementary School | 4375 Bannock Avenue | 215 | K-6 |
| Finney (Myrtle S.) Elementary School | 3950 Byrd Street | 321 | K-6 |
| Fletcher Elementary School | 7666 Bobolink Way | 129 | K-5 |
| Florence Elementary School | 3914 First Avenue | 157 | K-5 |
| Foster Elementary School | 6550 51st Street | 241 | K-5 |
| Franklin Elementary School | 4481 Copeland Avenue | 163 | K-5 |
| Freese Elementary School | 8140 Greenlawn Drive | 318 | K-5 |
| Fulton Elementary School | 7055 Skyline Drive | 320 | K-8 |
| Gage Elementary School | 6811 Bisby Lake Drive | 298 | K-5 |
| Garfield Elementary School | 4487 Oregon Street | 248 | K-5 |
| Garfield High School | 1255 16th Street | 74 | 9-12 |
| Godfrey G. Berry Elementary School | 2001 Rimbey Street | 387 | K-6 |
| Golden Hill Elementary School | 1240 33rd Street | 329 | K-8 |
| Gompers Preparatory Academy School | 1005 47th Street | 103 | 6-12 |
| Grant Elementary School | 1425 Washington Place | 455 | K-8 |
| Green Elementary School | 7030 Wandermere Place | 248 | K-5 |
| Hage Elementary School | 9750 Galvin Avenue | 456 | K-5 |
| Hamilton Elementary School | 2807 Fairmount Avenue | 350 | K-5 |
| Hancock Elementary School | 3303 Taussig Street | 381 | K-5 |
| Hardy Elementary School | 5420 Montezuma Road | 232 | K-5 |
| Harriet Tubman Village Charter School | 6880 Mohawk Street | 179 | K-8 |
| Hawthorne Elementary School | 4750 Lehrer Drive | 208 | K-6 |
| Health Sciences High And Middle College School | 3910 University Avenue, Suite 100 | 261 | 9-12 |
| Hearst Elementary School | 6230 Del Cerro Boulevard | 285 | K-5 |
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