| Agnes M. Baptist Elementary School | 1825 Cheyenne Way | 401 | K-6 |
| Alberta Martone Elementary School | 1413 Poust Road | 539 | K-6 |
| Alice N. Stroud Elementary School | 815 Frazine Road | 226 | K-6 |
| Aspire Summit Charter Academy School | 2036 Hatch Road | 348 | K-8 |
| Aspire University Charter School | 3313 Coffee Road | 158 | K-5 |
| Bernard L. Hughes Elementary School | 512 North McClure Road | 296 | K-6 |
| Bret Harte Elementary School | 909 Bret Harte Place | 482 | K-6 |
| Burbank Elementary School | 1135 Paradise Road | 391 | K-6 |
| Capistrano Elementary School | 400 Capistrano Drive | 248 | K-6 |
| Catherine Everett Elementary School | 1530 Mount Vernon Drive | 232 | K-6 |
| Christine Sipherd Elementary School | 3420 East Orangeburg Avenue | 313 | K-6 |
| Coleman F. Brown Elementary School | 2024 Vera Cruz Drive | 246 | K-5 |
| Daniel J. Savage Middle School | 1900 Maid Mariane Lane | 1,084 | 6-8 |
| El Vista Elementary School | 450 El Vista Avenue | 269 | K-6 |
| Elihu Beard Elementary School | 915 Bowen Avenue | 286 | K-6 |
| Elizabeth Ustach Middle School | 2701 Kodiak Drive | 875 | 6-8 |
| Elliott Adult Education Center School | 1440 Sunrise Avenue | - | - |
| Enslen Elementary School | 515 Coldwell Avenue | 239 | K-6 |
| Ethel Pearson Elementary School | 500 Locust Street | - | K-1 |
| Evelyn Hanshaw Middle School | 1725 Las Vegas Street | 787 | 7-8 |
| Fairview Elementary School | 1937 West Whitmore Avenue | 537 | K-6 |
| Franklin Elementary School | 120 South Emerald Avenue | 614 | K-6 |
| Fred C. Beyer High School | 1717 Sylvan Avenue | 1,409 | 9-12 |
| Freedom Elementary School | 2101 Fine Avenue | 341 | K-5 |
| George Eisenhut Elementary School | 1809 Sheldon Drive | 187 | K-6 |
| Grace M. Davis High School | 1200 West Rumble Road | 1,809 | 9-12 |
| Great Valley Academy School | 3200 Tully Road | 166 | K-4 |
| Harriette Kiren Elementary School | 1900 Kirschen Drive | 468 | K-6 |
| Hart-Ransom Academic Charter School | 3920 Shoemake Avenue | 191 | K-8 |
| Hart-Ransom Elementary School | 3930 Shoemake Avenue | 515 | K-8 |
| Independence Charter School | 3920 Blue Bird Drive | 22 | K-8 |
| James C. Enochs High School | 3201 Sylvan Avenue | 1,857 | 9-12 |
| James Marshall Elementary School | 515 Sutter Avenue | 470 | K-6 |
| John Fremont Elementary School | 1220 West Orangeburg Avenue | 361 | K-6 |
| John Muir Elementary School | 1215 Lucerne Avenue | 306 | K-6 |
| Joseph A. Gregori High School | 3701 Pirrone Road | - | 9-12 |
| Josephine Chrysler Elementary School | 2818 Conant Avenue | 306 | K-6 |
| La Loma Junior High School | 1800 Encina Avenue | 728 | 7-8 |
| Lakewood Elementary School | 2920 Middleboro Place | 292 | K-6 |
| M. Robert Adkison Elementary School | 1824 Nadine Avenue | 290 | K-6 |
| Mark Twain Junior High School | 707 Emerald Avenue | 741 | 7-8 |
| Mary Ann Sanders Elementary School | 3101 Fine Avenue | 390 | K-5 |
| Mary Lou Dieterich Elementary School | 2412 Warm Springs Drive | 356 | K-6 |
| Modesto High School | 18 H Street | 1,973 | 9-12 |
| Norman N. Glick Middle School | 400 Frazine Road | 455 | 7-8 |
| Orchard Elementary School | 1800 Wisdom Way | 323 | K-5 |
| Orville Wright Elementary School | 1602 Monterey Street | 273 | K-6 |
| Paradise Charter School | 3361 California Avenue | 87 | K-8 |
| Paradise Elementary School | 3361 California Avenue | 51 | K-8 |
| Peter Johansen High School | 641 Norseman Drive | 1,522 | 9-12 |
| Petersen Alternative Center For Education School | 2209 Blue Gum Avenue | 57 | 1-12 |
| Prescott Senior Elementary School | 2243 West Rumble Road | 637 | 7-8 |
| Robert Elliott Alternative Education Center School | 1440 Sunrise Avenue | 292 | 7-12 |
| Robertson Road Elementary School | 1821 Robertson Road | 244 | K-6 |
| Roosevelt Junior High School | 1330 College Avenue | 776 | 7-8 |
| Rose Avenue Elementary School | 1120 Rose Avenue | 346 | K-6 |
| Shackelford Elementary School | 100 School Avenue | 326 | K-6 |
| Sherwood Elementary School | 819 Rumble Road | 283 | K-5 |
| Shiloh Charter School | 6633 Paradise Road | - | K-8 |
| Shiloh Elementary School | 6633 Paradise Road | 89 | K-8 |
| Somerset Middle School | 1037 Floyd Avenue | 864 | 6-8 |
| Sonoma Elementary School | 1325 Sonoma Avenue | 327 | K-6 |
| Standiford Elementary School | 605 Tokay Avenue | 318 | K-5 |
| Stanislaus Community School | 2215 Blue Gum Avenue | 30 | K-12 |
| Stanislaus County Special Education School | 1100 H Street, Route 844 | 199 | K-12 |
| Stanislaus Elementary School | 1931 Kiernan Avenue | 170 | K-6 |
| Stockard Coffee Elementary School | 3900 Northview Drive | 285 | K-5 |
| Sylvan Elementary School | 2908 Coffee Road | 219 | K-5 |
| Thomas Downey High School | 1000 Coffee Road | 1,412 | 9-12 |
| Tuolumne Elementary School | 707 Herndon Road | 431 | K-6 |
| Valley Charter High School | 108 Campus Way | 84 | 9-12 |
| Virginia Parks Elementary School | 1021 Moffett Road | 464 | K-6 |
| Westport Elementary School | 5218 South Carpenter Road | 242 | K-6 |
| William Garrison Elementary School | 1811 Teresa Street | 194 | K-6 |
| Wilson Elementary School | 201 Wilson Avenue | 180 | K-6 |
| Woodrow Elementary School | 800 Woodrow Avenue | 263 | K-5 |
| Yosemite Rop School | 1100 H Street | - | 11-12 |