| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Case Middle School | 1237 WASHINGTON ST | 625 | 7-8 |
| Faith Fellowship Christian School | 131 MOORE AVE | 111 | PK-12 |
| Harold T Wiley School | 1351 WASHINGTON ST | 585 | 5-6 |
| Immaculate Heart Central High School | 1316 IVES ST | 317 | 9-12 |
| Immaculate Heart Elementary School | 122 WINTHROP ST | - | - |
| Knickerbocker School | 739 KNICKERBOCKER DR | 444 | K-4 |
| North Elementary School | 171 E HOARD ST | 534 | K-4 |
| Ohio Street School | 1537 OHIO ST | 324 | K-4 |
| Sherman School | 832 SHERMAN ST | 317 | K-4 |
| Starbuck Elementary School | 430 E HOARD ST | 118 | K-4 |
| Watertown City District School | 1351 WASHINGTON ST | - | - |
| Watertown Senior High School | 1335 WASHINGTON ST | 1,220 | 9-12 |
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