| Name | Address | Grade span |
|---|---|---|
| Bayview Elem | 24 S. Walnut St. | KG-4 |
| Clearwater Middle | 1650 Community Dr. | 5-8 |
| Southview Elem | 225 W. 4th St. | KG-4 |
| TRANSITIONS 110 | 504 INDUSTRIAL BLVD | 12 |
| Waconia ECSE | 504 Industrial Blvd. | - |
| Waconia ESY | 512 Industrial Blvd. | 1-12 |
| Waconia High | 1400 Community Dr. | 9-12 |
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