| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Benicia High School | 1101 Military West | 1,211 | 9-12 |
| Benicia Middle School | 1100 Southampton Road | 1,185 | 6-8 |
| Community Day School | 426 East K Street | 9 | 7-12 |
| Joe Henderson Elementary School | 650 Hastings Drive | 389 | K-5 |
| Liberty High School | 351 East J Street | 21 | 9-12 |
| Mary Farmar Elementary School | 901 Military West | 318 | K-5 |
| Matthew Turner Elementary School | 540 Rose Drive | 327 | K-5 |
| Robert Semple Elementary School | 2015 East Third Street | 275 | K-5 |
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