| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Fayette Mennonite School | 1468 LEADER RD | 43 | 1-8 |
| La Fayette School | 71 INSLEE ST | 361 | 3-5 |
| Main Street Elementary School | 202 W MAIN ST | 116 | K-5 |
| Skoi-Yase School | 65 FAYETTE ST | 310 | K-2 |
| Waterloo Central District School | 109 WASHINGTON ST | - | - |
| Waterloo High School | 96 STARK ST | 604 | 9-12 |
| Waterloo Middle School | 65 CENTER ST | 416 | 6-8 |
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