| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Central Elementary School | 212 3RD AVE N | - | 1-5 |
| Southeast Region Career And Tech Center School | 2101 9TH ST N | - | - |
| Wahpeton High School | 1021 11TH ST N | 499 | 9-12 |
| Wahpeton Middle School | 1209 LOY AVE | 308 | 6-8 |
| Wahpeton Spec Education Unit School | 508 9TH ST N | - | - |
| Zimmerman Elementary School | 508 9TH ST N | - | PK-1 |
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