| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Aileen Colburn Elementary School | 2201 Heller Street | 233 | K-6 |
| Atwater Castle Head Start School | 2050 Academy Drive | - | - |
| Atwater Community Day School | 1800 Juniper Avenue | 15 | 6-8 |
| Atwater High School | 2201 Fruitland Avenue | 1,311 | 9-12 |
| Bellevue Elementary School | 1020 East Bellevue Road | 393 | K-8 |
| Buhach Colony High School | 1800 Buhach Road | 1,277 | 9-12 |
| Elmer Wood Elementary School | 1271 West Bellevue Road | 354 | K-6 |
| Mitchell Elementary School | 1761 Grove Avenue | 284 | K-6 |
| Mitchell Intermediate School | 1753 Fifth Street | 621 | 7-8 |
| Peggy Heller Elementary School | 201 Lake View Drive | 395 | K-6 |
| Shaffer Elementary School | 1434 California Street | 325 | K-6 |
| Thomas Olaeta Elementary School | 2266 High Street | 278 | K-6 |
| Valley Atwater Community Day School | 3605 Hospital Road | 13 | 7-12 |
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