| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Central Elementary School | 933 E Avenue | 369 | K-6 |
| El Toyon Elementary School | 2000 East Division Street | 213 | K-6 |
| Granger Junior High School | 2101 Granger Avenue | 986 | 7-9 |
| Integrity Charter School | 701 National City Boulevard | 120 | K-8 |
| Ira Harbison School | 3235 East Eighth Street | 355 | K-6 |
| John A. Otis Elementary School | 621 East 18th Street | 241 | K-6 |
| Kimball School | 302 West 18th Street | 207 | K-6 |
| Las Palmas School | 1900 East 18th Street | 381 | K-6 |
| Lincoln Acres School | 2200 Lanoitan Avenue | 348 | K-6 |
| National City Adult School | 517 West 24th Street | - | - |
| National City Middle School | 1701 D Avenue | 751 | 7-8 |
| Olivewood School | 2505 F Avenue | 427 | K-6 |
| Palmer Way School | 2900 Palmer Street | 299 | K-6 |
| Rancho De La Nacion School | 1830 East Division Street | 249 | K-6 |
| South Region Community School | 800 National City Boulevard, Ste 110 | 27 | P-12 |
| Sweetwater High School | 2900 Highland Avenue | 1,783 | 9-12 |
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